Protein Engineering vol. 16 no. 12 pp. 871-874, 2003
© 2003 Oxford University Press
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Optimized electrostatic surfaces parallel increased thermostability: a structural bioinformatic analysis
1Department of Chemistry and 2Department of Biology, California State Polytechnic University at Pomona, Pomona, CA 91768, USA
3 To whom correspondence should be addressed. e-mail: drlivesay{at}csupomona.edu
It has been known for some time that thermophilic proteins generally have increased numbers of non-covalent interactions (salt bridges, hydrogen bonds, etc.) compared with their mesophilic orthologs. Recently, anecdotal structural comparisons suggest that non-specific acid–base ion pairs on the protein surface can be an evolutionary efficient mechanism to increase thermostability. In this comprehensive structural analysis, we confirm this to be the case. Comparison of 127 orthologous mesophilic– thermophilic protein groups indicates a clear preference for stabilizing acid–base pairs on the surface of thermophilic proteins. Compared with positions in the core, stabilizing surface mutations are less likely to disrupt the tertiary structure, and thus more likely to be evolutionarily selected. Therefore, we believe that our results, in addition to being theoretically interesting, will facilitate identification of charge-altering mutations likely to increase the stability of a particular protein structure.
Received July 23, 2003; revised October 14, 2003; accepted October 21, 2003