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ORIGINAL ARTICLES
ALSCRIPT: a tool to format multiple sequence alignments
Geoffrey J. Barton
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Article topics:
- Genetics..Sequence Alignment
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M. S. Alphey, M. Gabrielsen, E. Micossi, G. A. Leonard, S. M. McSweeney, R. B. G. Ravelli, E. Tetaud, A. H. Fairlamb, C. S. Bond, and W. N. Hunter Tryparedoxins from Crithidia fasciculata and Trypanosoma brucei: PHOTOREDUCTION OF THE REDOX DISULFIDE USING SYNCHROTRON RADIATION AND EVIDENCE FOR A CONFORMATIONAL SWITCH IMPLICATED IN FUNCTION J. Biol. Chem., July 3, 2003; 278(28): 25919 - 25925. [Abstract] [Full Text] [PDF] |
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S. P. Bennett, L. Lu, and D. L. Brutlag 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs Nucleic Acids Res., July 1, 2003; 31(13): 3328 - 3332. [Abstract] [Full Text] [PDF] |
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Y. J. K. Edwards, T. J. Carver, T. Vavouri, M. Frith, M. J. Bishop, and G. Elgar Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence Nucleic Acids Res., July 1, 2003; 31(13): 3510 - 3517. [Abstract] [Full Text] [PDF] |
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Z. Fujimoto, S. Kaneko, M. Momma, H. Kobayashi, and H. Mizuno Crystal Structure of Rice {alpha}-Galactosidase Complexed with D-Galactose J. Biol. Chem., May 23, 2003; 278(22): 20313 - 20318. [Abstract] [Full Text] [PDF] |
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H. R. Mott, D. Nietlispach, L. J. Hopkins, G. Mirey, J. H. Camonis, and D. Owen Structure of the GTPase-binding Domain of Sec5 and Elucidation of its Ral Binding Site J. Biol. Chem., May 2, 2003; 278(19): 17053 - 17059. [Abstract] [Full Text] [PDF] |
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C. A. Cunha, S. Macieira, J. M. Dias, G. Almeida, L. L. Goncalves, C. Costa, J. Lampreia, R. Huber, J. J. G. Moura, I. Moura, et al. Cytochrome c Nitrite Reductase from Desulfovibrio desulfuricans ATCC 27774. THE RELEVANCE OF THE TWO CALCIUM SITES IN THE STRUCTURE OF THE CATALYTIC SUBUNIT (NrfA) J. Biol. Chem., May 2, 2003; 278(19): 17455 - 17465. [Abstract] [Full Text] [PDF] |
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S. Bailey, S. E. Sedelnikova, P. Mesa, S. Ayora, J. P. Waltho, A. E. Ashcroft, A. J. Baron, J. C. Alonso, and J. B. Rafferty Structural Analysis of Bacillus subtilis SPP1 Phage Helicase Loader Protein G39P J. Biol. Chem., April 18, 2003; 278(17): 15304 - 15312. [Abstract] [Full Text] [PDF] |
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D. Wu, L. Govindasamy, W. Lian, Y. Gu, T. Kukar, M. Agbandje-McKenna, and R. McKenna Structure of Human Carnitine Acetyltransferase. MOLECULAR BASIS FOR FATTY ACYL TRANSFER J. Biol. Chem., April 4, 2003; 278(15): 13159 - 13165. [Abstract] [Full Text] [PDF] |
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R. Gurung, A. Tan, L. M. Ooms, M. J. McGrath, R. D. Huysmans, A. D. Munday, M. Prescott, J. C. Whisstock, and C. A. Mitchell Identification of a Novel Domain in Two Mammalian Inositol-polyphosphate 5-Phosphatases That Mediates Membrane Ruffle Localization. THE INOSITOL 5-PHOSPHATASE SKIP LOCALIZES TO THE ENDOPLASMIC RETICULUM AND TRANSLOCATES TO MEMBRANE RUFFLES FOLLOWING EPIDERMAL GROWTH FACTOR STIMULATION J. Biol. Chem., March 21, 2003; 278(13): 11376 - 11385. [Abstract] [Full Text] [PDF] |
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N. B. Cronin, A. O'Reilly, H. Duclohier, and B. A. Wallace Binding of the Anticonvulsant Drug Lamotrigine and the Neurotoxin Batrachotoxin to Voltage-gated Sodium Channels Induces Conformational Changes Associated with Block and Steady-state Activation J. Biol. Chem., March 14, 2003; 278(12): 10675 - 10682. [Abstract] [Full Text] [PDF] |
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S. J. Kim, J. R. Woo, Y. S. Hwang, D. G. Jeong, D. H. Shin, K. Kim, and S. E. Ryu The Tetrameric Structure of Haemophilus influenza Hybrid Prx5 Reveals Interactions between Electron Donor and Acceptor Proteins J. Biol. Chem., March 14, 2003; 278(12): 10790 - 10798. [Abstract] [Full Text] [PDF] |
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A. Meinhart, J. C. Alonso, N. Strater, and W. Saenger Crystal structure of the plasmid maintenance system varepsilon /zeta : Functional mechanism of toxin zeta and inactivation by varepsilon 2zeta 2 complex formation PNAS, February 18, 2003; 100(4): 1661 - 1666. [Abstract] [Full Text] [PDF] |
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J. K. Yang, M. S. Park, G. S. Waldo, and S. W. Suh Directed evolution approach to a structural genomics project: Rv2002 from Mycobacteriumtuberculosis PNAS, January 21, 2003; 100(2): 455 - 460. [Abstract] [Full Text] [PDF] |
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C. Ceccarelli, N. B. Grodsky, N. Ariyaratne, R. F. Colman, and B. J. Bahnson Crystal Structure of Porcine Mitochondrial NADP+-dependent Isocitrate Dehydrogenase Complexed with Mn2+ and Isocitrate. INSIGHTS INTO THE ENZYME MECHANISM J. Biol. Chem., November 1, 2002; 277(45): 43454 - 43462. [Abstract] [Full Text] [PDF] |
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S. Banerjee-Basu and A. D. Baxevanis Molecular Modeling of Mutations in the DNA-binding Domain of the Oncoprotein Qin Mol. Cancer Ther., November 1, 2002; 1(13): 1237 - 1241. [Abstract] [Full Text] [PDF] |
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M. Yamazaki, N. Li, V. A. Bondarenko, R. K. Yamazaki, W. Baehr, and A. Yamazaki Binding of cGMP to GAF Domains in Amphibian Rod Photoreceptor cGMP Phosphodiesterase (PDE). IDENTIFICATION OF GAF DOMAINS IN PDE alpha beta SUBUNITS AND DISTINCT DOMAINS IN THE PDE gamma SUBUNIT INVOLVED IN STIMULATION OF cGMP BINDING TO GAF DOMAINS J. Biol. Chem., October 18, 2002; 277(43): 40675 - 40686. [Abstract] [Full Text] [PDF] |
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D. Guillebault, S. Sasorith, E. Derelle, J.-M. Wurtz, J.-C. Lozano, S. Bingham, L. Tora, and H. Moreau A New Class of Transcription Initiation Factors, Intermediate between TATA Box-binding Proteins (TBPs) and TBP-like Factors (TLFs), Is Present in the Marine Unicellular Organism, the Dinoflagellate Crypthecodinium cohnii J. Biol. Chem., October 18, 2002; 277(43): 40881 - 40886. [Abstract] [Full Text] [PDF] |
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M. Sundaramoorthy, M. Meiyappan, P. Todd, and B. G. Hudson Crystal Structure of NC1 Domains. STRUCTURAL BASIS FOR TYPE IV COLLAGEN ASSEMBLY IN BASEMENT MEMBRANES J. Biol. Chem., August 16, 2002; 277(34): 31142 - 31153. [Abstract] [Full Text] [PDF] |
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Q. Xie, W. Bu, S. Bhatia, J. Hare, T. Somasundaram, A. Azzi, and M. S. Chapman The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy PNAS, August 6, 2002; 99(16): 10405 - 10410. [Abstract] [Full Text] [PDF] |
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J. M. Swart-Mataraza, Z. Li, and D. B. Sacks IQGAP1 Is a Component of Cdc42 Signaling to the Cytoskeleton J. Biol. Chem., June 28, 2002; 277(27): 24753 - 24763. [Abstract] [Full Text] [PDF] |
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C. Eicken, V. Sharma, T. Klabunde, M. B. Lawrenz, J. M. Hardham, S. J. Norris, and J. C. Sacchettini Crystal Structure of Lyme Disease Variable Surface Antigen VlsE of Borrelia burgdorferi J. Biol. Chem., June 7, 2002; 277(24): 21691 - 21696. [Abstract] [Full Text] [PDF] |
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D. R. Hall, C. S. Bond, G. A. Leonard, C. I. Watt, A. Berry, and W. N. Hunter Structure of Tagatose-1,6-bisphosphate Aldolase. INSIGHT INTO CHIRAL DISCRIMINATION, MECHANISM, AND SPECIFICITY OF CLASS II ALDOLASES J. Biol. Chem., June 7, 2002; 277(24): 22018 - 22024. [Abstract] [Full Text] [PDF] |
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M. E. Than, S. Henrich, R. Huber, A. Ries, K. Mann, K. Kuhn, R. Timpl, G. P. Bourenkov, H. D. Bartunik, and W. Bode The 1.9-A crystal structure of the noncollagenous (NC1) domain of human placenta collagen IV shows stabilization via a novel type of covalent Met-Lys cross-link PNAS, May 14, 2002; 99(10): 6607 - 6612. [Abstract] [Full Text] [PDF] |
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L. E. Kemp, C. S. Bond, and W. N. Hunter Structure of 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase: An essential enzyme for isoprenoid biosynthesis and target for antimicrobial drug development PNAS, May 14, 2002; 99(10): 6591 - 6596. [Abstract] [Full Text] [PDF] |
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S.-T. Jeong, H.-K. Kim, S.-J. Kim, S.-W. Chi, J.-G. Pan, T.-K. Oh, and S.-E. Ryu Novel Zinc-binding Center and a Temperature Switch in the Bacillus stearothermophilus L1 Lipase J. Biol. Chem., May 3, 2002; 277(19): 17041 - 17047. [Abstract] [Full Text] [PDF] |
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M. C. Nonato, J. Widom, and J. Clardy Crystal Structure of the N-terminal Segment of Human Eukaryotic Translation Initiation Factor 2alpha J. Biol. Chem., May 3, 2002; 277(19): 17057 - 17061. [Abstract] [Full Text] [PDF] |
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