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PEDS Advance Access published online on December 3, 2004

Protein Engineering Design and Selection, doi:10.1093/protein/gzh092
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Protein Engineering, Design & Selection © Oxford University Press 2004; all rights reserved
Received July 6, 2004
Revised November 1, 2004
Accepted November 22, 2004

Article

Negatively charged purification tags for selective anion-exchange recovery

M. Hedhammar 1, T. Gräslund 1, M. Uhlén 1, and S. Hober 1*

1 Dept. of Biotechnology, Royal Inst. of Technology (KTH), SE-106 91 Stockholm, Sweden

* To whom correspondence should be addressed.
S. Hober, E-mail: sophia.hober{at}biotech.kth.se


   Abstract

Here we describe a novel strategy for highly selective purification of recombinant fusion protein using highly negatively charged protein domains which were constructed by protein design. A triple alpha-helical domain of 58 amino acids was used as scaffold. Far-ultraviolet circular dichroism measurements showed that the designed domains had very low {alpha}-helicity in low conductivity environment in contrast to the scaffold. The secondary structure could be induced by adding salt, giving a structure comparable to the parental molecule. Further studies showed that the new domains were able to bind to an anion exchanger even at pH values down to 5 and 6. Gene fusions between one of the designed domains and different target proteins, such as Green Fluorescent Protein (GFP), Maltose Binding Protein (MBP) and Firefly Luciferase, were also constructed. These gene products could be efficiently purified from whole cell lysates at pH 6 using anion-exchange chromatography.

Keywords: ion-exchange chromatography; protein design; Protein A; Z domain.
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