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PEDS Advance Access published online on October 29, 2008

Protein Engineering Design and Selection, doi:10.1093/protein/gzn058
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© The Author 2008. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oxfordjournals.org

Modelling the human immune response: performance of a 1011 human antibody repertoire against a broad panel of therapeutically relevant antigens

C. Lloyd1, D. Lowe, B. Edwards, F. Welsh, T. Dilks, C. Hardman and T. Vaughan

MedImmune, Milstein Building, Granta Park, Cambridge CB21 6GH, UK

1 To whom correspondence should be addressed. lloydc{at}medimmune.com

A large 1.29 x 1011 antibody fragment library, based upon variable (V) genes isolated from human B-cells from 160 donors has been constructed and its performance measured against a panel of 28 different clinically relevant antigens. Over 5000 different target-specific antibodies were isolated to the 28 antigens with 3340 identified as modulating the biological function (e.g. antagonism, agonism) of the target antigen. This represents an average of ~120 different functionally active antibodies per target. Analysis of a sample of >800 antibodies from the unselected library indicates V gene usage is representative of the human immune system with no strong bias towards any particular VHVL pairing. Germline diversity is broad with 45/49 functional VH germlines and 28/30 V{lambda} and 30/35 V{kappa} light-chain germlines represented in the sample. The number of functional VH germlines and V{kappa} light-chain germlines present is increased to 48/49 and 31/35, respectively, when selected V gene usage is included in the analysis. However, following selection on the antigen panel, VH1–V{lambda}1 germline family pairings are preferentially enriched and represent a remarkable 25% of the antigen-specific selected repertoire.

Keywords: antibody/human/library/phage display/scFv

Received September 15, 2008; revised September 15, 2008; accepted October 4, 2008.


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