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Previous Next 		Contents: Volume 22, Number 9, September 2009   [Index by Author] 

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Computational Methods Special Issue

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To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

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Almer M. Van der Sloot, Christina Kiel, Luis Serrano, and Francois Stricher
Protein design in biological networks: from manipulating the input to modifying the output
PEDS Advance Access published on July 2, 2009
Protein Engineering, Design and Selection 2009 22: 537-542; doi:10.1093/protein/gzp032 [Abstract] [Full Text] [PDF] [Request Permissions]  

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Michael W. Deem and Keyao Pan
The epitope regions of H1-subtype influenza A, with application to vaccine efficacy
PEDS Advance Access published on July 3, 2009
Protein Engineering, Design and Selection 2009 22: 543-546; doi:10.1093/protein/gzp027 [Abstract] [FREE Full Text] [PDF]   Creative Commons License OPEN ACCESS  

Emil Sobolewski, Mariusz Makowski, Stanislaw Oldziej, Cezary Czaplewski, Adam Liwo, and Harold A. Scheraga
Towards temperature-dependent coarse-grained potentials of side-chain interactions for protein folding simulations. I: Molecular dynamics study of a pair of methane molecules in water at various temperatures
PEDS Advance Access published on June 25, 2009
Protein Engineering, Design and Selection 2009 22: 547-552; doi:10.1093/protein/gzp028 [Abstract] [Full Text] [PDF] [Request Permissions]  

Vladimir Potapov, Mati Cohen, and Gideon Schreiber
Assessing computational methods for predicting protein stability upon mutation: good on average but not in the details
PEDS Advance Access published on June 26, 2009
Protein Engineering, Design and Selection 2009 22: 553-560; doi:10.1093/protein/gzp030 [Abstract] [Full Text] [PDF] [Request Permissions]  

Lawrence A. Kelley, Paul J. Shrimpton, Stephen H. Muggleton, and Michael J.E. Sternberg
Discovering rules for protein–ligand specificity using support vector inductive logic programming
PEDS Advance Access published on July 2, 2009
Protein Engineering, Design and Selection 2009 22: 561-567; doi:10.1093/protein/gzp035 [Abstract] [Full Text] [PDF] [Request Permissions]  

M.S. Madhusudhan, Benjamin M. Webb, Marc A. Marti-Renom, Narayanan Eswar, and Andrej Sali
Alignment of multiple protein structures based on sequence and structure features
PEDS Advance Access published on July 8, 2009
Protein Engineering, Design and Selection 2009 22: 569-574; doi:10.1093/protein/gzp040 [Abstract] [Full Text] [PDF] [Request Permissions]  

Liwei Li, Shide Liang, Meaghan M. Pilcher, and Samy O. Meroueh
Incorporating receptor flexibility in the molecular design of protein interfaces
PEDS Advance Access published on July 30, 2009
Protein Engineering, Design and Selection 2009 22: 575-586; doi:10.1093/protein/gzp042 [Abstract] [Full Text] [PDF] [Supplementary Data] [Request Permissions]  

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.