Protein Eng Des Sel: Most-Cited Full-Text Articles http://peds.oxfordjournals.org/ Most-cited rankings are recalculated at the beginning of the month and are based on citations to articles on this journal site from articles in other HighWire-hosted journals. 2009-11-18 <![CDATA[Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites]]> http://peds.oxfordjournals.org/cgi/content/short/10/1/1?rss=1&ssource=mfc Jan 1, 1997; 10:1-6
ARTICLES]]> H Nielsen, J Engelbrecht, S Brunak, G von Heijne 1997-01-01 10.1093/protein/10.1.1 Oxford University Press <![CDATA[LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions]]> http://peds.oxfordjournals.org/cgi/content/short/8/2/127?rss=1&ssource=mfc Feb 1, 1995; 8:127-134
ORIGINAL ARTICLES]]> Andrew C. Wallace, Roman A. Laskowski, Janet M. Thornton 1995-02-01 10.1093/protein/8.2.127 Oxford University Press <![CDATA[Protein structure alignment by incremental combinatorial extension (CE) of the optimal path]]> http://peds.oxfordjournals.org/cgi/content/short/11/9/739?rss=1&ssource=mfc Sep 1, 1998; 11:739-747
ARTICLES]]> IN Shindyalov, PE Bourne 1998-09-01 10.1093/protein/11.9.739 Oxford University Press <![CDATA[Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method]]> http://peds.oxfordjournals.org/cgi/content/short/10/6/673?rss=1&ssource=mfc Jun 1, 1997; 10:673-676
ARTICLES]]> M Cserzo, E Wallin, I Simon, G von Heijne, A Elofsson 1997-06-01 10.1093/protein/10.6.673 Oxford University Press <![CDATA[ALSCRIPT: a tool to format multiple sequence alignments]]> http://peds.oxfordjournals.org/cgi/content/short/6/1/37?rss=1&ssource=mfc Jan 1, 1993; 6:37-40
ORIGINAL ARTICLES]]> Geoffrey J. Barton 1993-01-01 10.1093/protein/6.1.37 Oxford University Press <![CDATA[The {alpha}/{beta} hydrolase fold]]> http://peds.oxfordjournals.org/cgi/content/short/5/3/197?rss=1&ssource=mfc Apr 1, 1992; 5:197-211
ORIGINAL ARTICLES]]> David L. Ollis, Eong Cheah, Miroslaw Cygler, Bauke Dijkstra, Felix Frolow, Sybille M. Franken, Michal Harel, S. Jamse Remington, Israel Silman, Joseph Schrag, Joel L. Sussman, Koen H.G. Verschueren, Adrian Goldman 1992-04-01 10.1093/protein/5.3.197 Oxford University Press <![CDATA[Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network]]> http://peds.oxfordjournals.org/cgi/content/short/6/4/383?rss=1&ssource=mfc Jun 1, 1993; 6:383-390
ORIGINAL ARTICLES]]> M.A. Andrade, P. Chacon, J.J. Merelo, F. Moran 1993-06-01 10.1093/protein/6.4.383 Oxford University Press <![CDATA[Twilight zone of protein sequence alignments]]> http://peds.oxfordjournals.org/cgi/content/short/12/2/85?rss=1&ssource=mfc Feb 1, 1999; 12:85-94
ORIGINAL ARTICLES]]> Burkhard Rost 1999-02-01 10.1093/protein/12.2.85 Oxford University Press <![CDATA[Machine learning approaches for the prediction of signal peptides and other protein sorting signals]]> http://peds.oxfordjournals.org/cgi/content/short/12/1/3?rss=1&ssource=mfc Jan 1, 1999; 12:3-9
]]> Henrik Nielsen, Soren Brunak, Gunnar von Heijne 1999-01-01 10.1093/protein/12.1.3 Oxford University Press <![CDATA[Sequence differences between glycosylated and non-glycosylated Asn-X-Thr/Ser acceptor sites: implications for protein engineering]]> http://peds.oxfordjournals.org/cgi/content/short/3/5/433?rss=1&ssource=mfc Apr 1, 1990; 3:433-442
ORIGINAL ARTICLES]]> Ylva Gavel, Gunnar von Heijne 1990-04-01 10.1093/protein/3.5.433 Oxford University Press <![CDATA[Quantitative analysis of protein far UV circular dichroism spectra by neural networks]]> http://peds.oxfordjournals.org/cgi/content/short/5/3/191?rss=1&ssource=mfc Apr 1, 1992; 5:191-195
ORIGINAL ARTICLES]]> Gerald Bohm, Rudolf Muhr, Rainer Jaenicke 1992-04-01 10.1093/protein/5.3.191 Oxford University Press <![CDATA[An attempt to unify the structure of polymerases]]> http://peds.oxfordjournals.org/cgi/content/short/3/6/461?rss=1&ssource=mfc May 1, 1990; 3:461-467
ORIGINAL ARTICLES]]> Marc Delarue, Olivier Poch, Noel Tordo, Dino Moras, Patrick Argos 1990-05-01 10.1093/protein/3.6.461 Oxford University Press <![CDATA[Single-stranded DNA 'blue' T7 promoter plasmids: a versatile tandem promoter system for cloning and protein engineering]]> http://peds.oxfordjournals.org/cgi/content/short/1/1/67?rss=1&ssource=mfc Oct 1, 1986; 1:67-74
ORIGINAL ARTICLES]]> David A. Mead, Elzbieta Szczesna-Skorupa, Byron Kemper 1986-10-01 10.1093/protein/1.1.67 Oxford University Press <![CDATA[SOPM: a self-optimized method for protein secondary structure prediction]]> http://peds.oxfordjournals.org/cgi/content/short/7/2/157?rss=1&ssource=mfc Feb 1, 1994; 7:157-164
ORIGINAL ARTICLES]]> C. Geourjon, G. Deleage 1994-02-01 10.1093/protein/7.2.157 Oxford University Press <![CDATA[Cleavage-site motifs in mitochondrial targeting peptides]]> http://peds.oxfordjournals.org/cgi/content/short/4/1/33?rss=1&ssource=mfc Oct 1, 1990; 4:33-37
ORIGINAL ARTICLES]]> Ylva Gavel, Gunnar von Heijne 1990-10-01 10.1093/protein/4.1.33 Oxford University Press <![CDATA[A synthetic IgG-binding domain based on staphylococcal protein A]]> http://peds.oxfordjournals.org/cgi/content/short/1/2/107?rss=1&ssource=mfc Feb 1, 1987; 1:107-113
ORIGINAL ARTICLES]]> Bjorn Nilsson, Tomas Moks, Birger Jansson, Lars Abrahmsen, Anette Elmblad, Erik Holmgren, Christina Henrichson, T.Alwyn Jones, Mathias Uhlen 1987-02-01 10.1093/protein/1.2.107 Oxford University Press <![CDATA[Analysis and prediction of leucine-rich nuclear export signals]]> http://peds.oxfordjournals.org/cgi/content/short/17/6/527?rss=1&ssource=mfc Jun 1, 2004; 17:527-536
ORIGINAL ARTICLES]]> Tanja la Cour, Lars Kiemer, Anne Molgaard, Ramneek Gupta, Karen Skriver, Soren Brunak 2004-06-01 Oxford University Press <![CDATA[The structure of signal peptides from bacterial lipoproteins]]> http://peds.oxfordjournals.org/cgi/content/short/2/7/531?rss=1&ssource=mfc May 1, 1989; 2:531-534
ORIGINAL ARTICLES]]> Gunnar von Heijne 1989-05-01 10.1093/protein/2.7.531 Oxford University Press <![CDATA[Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence]]> http://peds.oxfordjournals.org/cgi/content/short/9/2/133?rss=1&ssource=mfc Feb 1, 1996; 9:133-142
ORIGINAL ARTICLES]]> Dmitrij Frishman, Patrick Argos 1996-02-01 10.1093/protein/9.2.133 Oxford University Press <![CDATA[Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency]]> http://peds.oxfordjournals.org/cgi/content/short/14/12/993?rss=1&ssource=mfc Dec 1, 2001; 14:993-1000
ORIGINAL ARTICLES]]> Rachel B. Kapust, Jozsef Tozser, Jeffrey D. Fox, D.Eric Anderson, Scott Cherry, Terry D. Copeland, David S. Waugh 2001-12-01 10.1093/protein/14.12.993 Oxford University Press <![CDATA[Evidence for a second conserved arginine residue in the integrase family of recombination proteins]]> http://peds.oxfordjournals.org/cgi/content/short/5/1/87?rss=1&ssource=mfc Jan 1, 1992; 5:87-91
ORIGINAL ARTICLES]]> Kenneth E. Abremski, Ronald H. Hoess 1992-01-01 10.1093/protein/5.1.87 Oxford University Press <![CDATA[Determination of three-dimensional structures of proteins by simulated annealing with interproton distance restraints. Application to crambin, potato carboxypeptidase inhibitor and barley serine proteinase inhibitor 2]]> http://peds.oxfordjournals.org/cgi/content/short/2/1/27?rss=1&ssource=mfc Apr 1, 1988; 2:27-38
ORIGINAL ARTICLES]]> Michael Nilges, Angela M. Gronenborn, Axel T. Brunger, G. Marius Clore 1988-04-01 10.1093/protein/2.1.27 Oxford University Press <![CDATA[An algorithm for protein secondary structure prediction based on class prediction]]> http://peds.oxfordjournals.org/cgi/content/short/1/4/289?rss=1&ssource=mfc Aug 1, 1987; 1:289-294
ORIGINAL ARTICLES]]> G. Deleage, B. Roux 1987-08-01 10.1093/protein/1.4.289 Oxford University Press <![CDATA[Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling]]> http://peds.oxfordjournals.org/cgi/content/short/5/1/35?rss=1&ssource=mfc Jan 1, 1992; 5:35-41
ORIGINAL ARTICLES]]> Randall F. Smith, Temple F. Smmith 1992-01-01 10.1093/protein/5.1.35 Oxford University Press <![CDATA[Sequence properties of GPI-anchored proteins near the omega-site: constraints for the polypeptide binding site of the putative transamidase]]> http://peds.oxfordjournals.org/cgi/content/short/11/12/1155?rss=1&ssource=mfc Dec 1, 1998; 11:1155-1161
ARTICLES]]> B Eisenhaber, P Bork, F Eisenhaber 1998-12-01 10.1093/protein/11.12.1155 Oxford University Press <![CDATA[Conformational change of proteins arising from normal mode calculations]]> http://peds.oxfordjournals.org/cgi/content/short/14/1/1?rss=1&ssource=mfc Jan 1, 2001; 14:1-6
]]> F. Tama, Y.-H. Sanejouand 2001-01-01 10.1093/protein/14.1.1 Oxford University Press <![CDATA[Recursive PCR: a novel technique for total gene synthesis]]> http://peds.oxfordjournals.org/cgi/content/short/5/8/827?rss=1&ssource=mfc Dec 1, 1992; 5:827-829
PROTOCOL]]> Chrisostomos Prodromou, Laurence H. Pearl 1992-12-01 10.1093/protein/5.8.827 Oxford University Press <![CDATA[Homology modelling and protein engineering strategy of subtilases, the family of subtilisin-like serine proteinases]]> http://peds.oxfordjournals.org/cgi/content/short/4/7/719?rss=1&ssource=mfc Oct 1, 1991; 4:719-737
RESEARCH REVIEW]]> Roland J. Siezen, William M. de Vos, Jack A.M. Leunissen, Bauke W. Dijkstra 1991-10-01 10.1093/protein/4.7.719 Oxford University Press <![CDATA[An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies]]> http://peds.oxfordjournals.org/cgi/content/short/9/11/1063?rss=1&ssource=mfc Nov 1, 1996; 9:1063-1065
PROTOCOL]]> Lawrence A. Kelley, Stephen P. Gardner, Michael J. Sutcliffe 1996-11-01 10.1093/protein/9.11.1063 Oxford University Press <![CDATA[Similarity of phylogenetic trees as indicator of protein-protein interaction]]> http://peds.oxfordjournals.org/cgi/content/short/14/9/609?rss=1&ssource=mfc Sep 1, 2001; 14:609-614
]]> Florencio Pazos, Alfonso Valencia 2001-09-01 10.1093/protein/14.9.609 Oxford University Press <![CDATA[{beta}-Turns and their distortions: a proposed new nomenclature]]> http://peds.oxfordjournals.org/cgi/content/short/3/6/479?rss=1&ssource=mfc May 1, 1990; 3:479-493
ORIGINAL ARTICLES]]> C.M. Wilmot, J.M. Thornton 1990-05-01 10.1093/protein/3.6.479 Oxford University Press <![CDATA[Attenuation of green fluorescent protein half-life in mammalian cells]]> http://peds.oxfordjournals.org/cgi/content/short/12/12/1035?rss=1&ssource=mfc Dec 1, 1999; 12:1035-1040
COMMUNICATIONS]]> Pete Corish, Chris Tyler-Smith 1999-12-01 10.1093/protein/12.12.1035 Oxford University Press <![CDATA[A model of the lutropin/choriogonadotropin receptor: insights into the structural and functional effects of constitutively activating mutations]]> http://peds.oxfordjournals.org/cgi/content/short/10/5/501?rss=1&ssource=mfc May 1, 1997; 10:501-510
ARTICLES]]> Z Lin, A Shenker, R Pearlstein 1997-05-01 10.1093/protein/10.5.501 Oxford University Press <![CDATA[Prediction of the structure of human Janus kinase 2 (JAK2) comprising the two carboxy-terminal domains reveals a mechanism for autoregulation]]> http://peds.oxfordjournals.org/cgi/content/short/14/1/27?rss=1&ssource=mfc Jan 1, 2001; 14:27-37
]]> Klaus Lindauer, Thomas Loerting, Klaus R. Liedl, Romano T. Kroemer 2001-01-01 10.1093/protein/14.1.27 Oxford University Press <![CDATA[Factors enhancing protein thermostability]]> http://peds.oxfordjournals.org/cgi/content/short/13/3/179?rss=1&ssource=mfc Mar 1, 2000; 13:179-191
ORIGINAL ARTICLES]]> Sandeep Kumar, Chung-Jung Tsai, Ruth Nussinov 2000-03-01 10.1093/protein/13.3.179 Oxford University Press <![CDATA[The Q-linker: a class of interdomain sequences found in bacterial multidomain regulatory proteins]]> http://peds.oxfordjournals.org/cgi/content/short/2/7/535?rss=1&ssource=mfc May 1, 1989; 2:535-543
ORIGINAL ARTICLES]]> J.C. Wootton, M.H. Drummond 1989-05-01 10.1093/protein/2.7.535 Oxford University Press <![CDATA[Prediction of proprotein convertase cleavage sites]]> http://peds.oxfordjournals.org/cgi/content/short/17/1/107?rss=1&ssource=mfc Jan 1, 2004; 17:107-112
ORIGINAL ARTICLES]]> Peter Duckert, Soren Brunak, Nikolaj Blom 2004-01-01 10.1093/protein/gzh013 Oxford University Press <![CDATA[Directed evolution converts subtilisin E into a functional equivalent of thermitase]]> http://peds.oxfordjournals.org/cgi/content/short/12/1/47?rss=1&ssource=mfc Jan 1, 1999; 12:47-53
ORIGINAL ARTICLES]]> Huimin Zhao, Frances H. Arnold 1999-01-01 10.1093/protein/12.1.47 Oxford University Press <![CDATA[Mutagenesis of a flexible loop in streptavidin leads to higher affinity for the Strep-tag II peptide and improved performance in recombinant protein purification]]> http://peds.oxfordjournals.org/cgi/content/short/10/8/975?rss=1&ssource=mfc Aug 1, 1997; 10:975-982
ARTICLES]]> S Voss, A Skerra 1997-08-01 10.1093/protein/10.8.975 Oxford University Press <![CDATA[Prediction of proteasome cleavage motifs by neural networks]]> http://peds.oxfordjournals.org/cgi/content/short/15/4/287?rss=1&ssource=mfc Apr 1, 2002; 15:287-296
ORIGINAL ARTICLES]]> Can Kesmir, Alexander K. Nussbaum, Hansjorg Schild, Vincent Detours, Soren Brunak 2002-04-01 10.1093/protein/15.4.287 Oxford University Press <![CDATA[Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?]]> http://peds.oxfordjournals.org/cgi/content/short/7/3/349?rss=1&ssource=mfc Mar 1, 1994; 7:349-358
ORIGINAL ARTICLES]]> I.N. Shindyalov, N.A. Kolchanov, C. Sander 1994-03-01 10.1093/protein/7.3.349 Oxford University Press <![CDATA[Crystal structure of human serum albumin at 2.5 A resolution]]> http://peds.oxfordjournals.org/cgi/content/short/12/6/439?rss=1&ssource=mfc Jun 1, 1999; 12:439-446
ORIGINAL ARTICLES]]> S. Sugio, A. Kashima, S. Mochizuki, M. Noda, K. Kobayashi 1999-06-01 10.1093/protein/12.6.439 Oxford University Press <![CDATA[Stereochemical modeling of disulfide bridges. Criteria for introduction into proteins by site-directed mutagenesis]]> http://peds.oxfordjournals.org/cgi/content/short/3/2/95?rss=1&ssource=mfc Nov 1, 1989; 3:95-103
ORIGINAL ARTICLES]]> R. Sowdhamini, N. Srinivasan, Brian Shoichet, Daniel V. Santi, C. Ramakrishnan, P. Balaram 1989-11-01 10.1093/protein/3.2.95 Oxford University Press <![CDATA[Knowledge based modelling of homologous proteins, part I: three-dimensional frameworks derived from the simultaneous superposition of multiple structures]]> http://peds.oxfordjournals.org/cgi/content/short/1/5/377?rss=1&ssource=mfc Oct 1, 1987; 1:377-384
ORIGINAL ARTICLES]]> M.J. Sutcliffe, I. Haneef, D. Carney, T.L. Blundell 1987-10-01 10.1093/protein/1.5.377 Oxford University Press <![CDATA[Convex constraint analysis: a natural deconvolution of circular dichroism curves of proteins]]> http://peds.oxfordjournals.org/cgi/content/short/4/6/669?rss=1&ssource=mfc Aug 1, 1991; 4:669-679
ORIGINAL ARTICLES]]> Andr{acute}s Perczel, Milkos Hollosi, G{acute}bor Tusn{acute}dy, Gerald D. Fasman 1991-08-01 10.1093/protein/4.6.669 Oxford University Press <![CDATA[Stable, soluble T-cell receptor molecules for crystallization and therapeutics]]> http://peds.oxfordjournals.org/cgi/content/short/16/9/707?rss=1&ssource=mfc Sep 1, 2003; 16:707-711
ORIGINAL ARTICLES]]> Jonathan M. Boulter, Meir Glick, Penio T. Todorov, Emma Baston, Malkit Sami, Pierre Rizkallah, Bent K. Jakobsen 2003-09-01 10.1093/protein/gzg087 Oxford University Press <![CDATA[The function of tryptophan residues in membrane proteins]]> http://peds.oxfordjournals.org/cgi/content/short/5/3/213?rss=1&ssource=mfc Apr 1, 1992; 5:213-214
ORIGINAL ARTICLES]]> M. Schiffer, C.-H. Chang, F.J. Stevens 1992-04-01 10.1093/protein/5.3.213 Oxford University Press <![CDATA[Amino acid substitution during functionally constrained divergent evolution of protein sequences]]> http://peds.oxfordjournals.org/cgi/content/short/7/11/1323?rss=1&ssource=mfc Nov 1, 1994; 7:1323-1332
ORIGINAL ARTICLES]]> S. A. Bennet, M. A. Cohen, G. H. Gonnet 1994-11-01 10.1093/protein/7.11.1323 Oxford University Press <![CDATA[Domain swapping in G-protein coupled receptor dimers]]> http://peds.oxfordjournals.org/cgi/content/short/11/12/1181?rss=1&ssource=mfc Dec 1, 1998; 11:1181-1193
ARTICLES]]> PR Gouldson, CR Snell, RP Bywater, C Higgs, CA Reynolds 1998-12-01 10.1093/protein/11.12.1181 Oxford University Press <![CDATA[Model building of disulfide bonds in proteins with known three-dimensional structure]]> http://peds.oxfordjournals.org/cgi/content/short/2/2/119?rss=1&ssource=mfc Jul 1, 1988; 2:119-125
ORIGINAL ARTICLES]]> Bart Hazes, Bauke W. Dijkstra 1988-07-01 10.1093/protein/2.2.119 Oxford University Press